| Aboriginal Hostels Limited |
| Australian Securities and Investments Commission |
| Administrative Appeals Tribunal |
| Australian Skills Quality Authority |
| Agriculture |
| Australian Sports Anti–Doping Authority |
| Attorney General's Department |
| Australian Taxation Office |
| Australian Bureau of Statistics |
| Australian Trade Commission (Austrade) |
| Australian Centre for International Agricultural Research |
| Australian Transaction Reports and Analysis Centre |
| Australian Commission for Law Enforcement Integrity |
| Australian Transport Safety Bureau |
| Australian Commission on Safety and Quality in Health Care |
| Australian War Memorial |
| Australian Communications and Media Authority |
| Bureau of Meteorology |
| Australian Competition and Consumer Commission |
| Cancer Australia |
| Australian Crime Commission |
| Clean Energy Regulator |
| Australian Customs & Border Protection Service |
| Climate Change Authority |
| Australian Electoral Commission |
| Comcare |
| Australian Financial Security Authority |
| Commonwealth Grants Commission |
| Australian Fisheries Management Authority |
| Commonwealth Superannuation Administration (ComSuper) |
| Australian Human Rights Commission |
| Communications |
| Australian Institute of Aboriginal and Torres Strait Islander Studies |
| Corporations and Markets Advisory Committee |
| Australian Institute of Criminology |
| CrimTrac Agency |
| Australian Institute of Family Studies |
| Defence |
| Australian Institute of Health and Welfare |
| Defence Housing Australia |
| Australian Law Reform Commission |
| Education |
| Australian National Audit Office |
| Employment |
| Australian National Maritime Museum |
| Environment |
| Australian National Preventive Health Agency |
| Fair Work Building and Construction |
| Australian Office of Financial Management |
| Fair Work Commission |
| Australian Pesticides and Veterinary Medicines Authority |
| Family Court and Federal Circuit Court |
| Australian Public Service Commission |
| Federal Court of Australia |
| Australian Radiation Protection & Nuclear Safety Agency |
| Finance |
| Australian Research Council |
| Food Standards Australia New Zealand |
| Foreign Affairs and Trade |
| National Portrait Gallery |
| Future Fund Management Agency |
| National Water Commission |
| Geoscience Australia |
| Office of National Assessments |
| Great Barrier Reef Marine Park Authority |
| Office of Parliamentary Counsel |
| Health |
| Office of the Australian Information Commissioner |
| Human Services |
| Office of the Commonwealth Director of Public Prosecutions |
| Immigration and Border Protection |
| Office of the Commonwealth Ombudsman |
| Independent Hospital Pricing Authority |
| Office of the Fair Work Ombudsman |
| Industry |
| Office of the Inspector General of Intelligence and Security |
| Infrastructure and Regional Development |
| Office of the Inspector–General of Taxation |
| IP Australia |
| Old Parliament House |
| Migration Review Tribunal and Refugee Review Tribunal |
| Organ and Tissue Authority |
| Murray–Darling Basin Authority |
| Prime Minister and Cabinet |
| National Archives of Australia |
| Private Health Insurance Ombudsman |
| National Blood Authority |
| Productivity Commission |
| National Capital Authority |
| Professional Services Review |
| National Competition Council |
| Royal Australian Mint |
| National Disability Insurance Agency |
| Safe Work Australia |
| National Film and Sound Archive |
| Screen Australia |
| National Health and Medical Research Council |
| Social Services |
| National Health Funding Body |
| Telecommunications Universal Service Management Agency |
| National Health Performance Authority |
| Tertiary Education Quality and Standards Agency |
| National Library of Australia |
| Torres Strait Regional Authority |
| National Mental Health Commission |
| Treasury |
| National Museum of Australia |
| Veterans' Affairs |
| Nat. Offshore Petroleum Safety and Environmental Management Authority |
| Workplace Gender Equality Agency |
Note: This list reflects the names of APS agencies having employees under the PS Act as at 31 December 2013. Some agencies may have changed name or have been affected by Machinery of Government changes since then.